Ψ OPN1LW - Balaenoptera acutorostrata

Reference Gene:
Job_ID:
Curator:
GlossID Species Gene Loss Mechanism Loss Type Lineage Specific Evidence Accession Nr.
GL_NCDASW Balaenoptera acutorostrata LOF (frameshift, premature stop, ss) Full No PCR & Sanger Sequencing Single XM_007185533.2

Statements

Type Excerpt DOI
Functional "The three opsins that characterize most mammals include a rod opsin (RH1) and two cone opsins, short wavelength-sensitive opsin (SWS1) and long wavelength-sensitive opsin (LWS). Rods mainly function in dim light conditions (scotopic/night vision) whereas cones require more light (photopic vision) and are necessary with color vision." 10.1371/journal.pgen.1003432
Mutation Description "Reconstructions of ancestral sequences imply eight frameshift indels and three splice site disruptions within Cetacea, with convergent inactivation of LWS on the following five branches (Figure 1): Physeter macrocephalus, Kogia breviceps, Mesoplodon bidens, stem Balaenidae (node 28 to node 29), and stem Balaenopteroidea (node 30 to node 31)." 10.1371/journal.pgen.1003432
Methodology & Validation "Previously published RH1, SWS1, and LWS sequences for Cetacea were combined with new sequences that were generated through PCR and dideoxy sequencing." 10.1371/journal.pgen.1003432
Phenotypic "The tandem inactivation of SWS1 and LWS in these taxa presumably renders them rod monochromats, a condition that was previously unknown within Mammalia." 10.1371/journal.pgen.1003432
Phenotypic "LWS, in turn, was pseudogenized convergently in five different cetacean lineages [right whale plus bowhead, rorquals plus gray whale, Sowerby’s beaked whale, giant sperm whale, pygmy sperm whale], all of which are deep divers that feed on bioluminescent organisms." 10.1371/journal.pgen.1003432

Curator Observations

See table 1 for a detailed mutational description.