Reference Gene

Gene name Alias Species Exons Type Paralogs EC number OMIM
OPN1LW opsin 1, long wave sensitive CBP , RCP , ROP , CBBM , COD5 Homo sapiens 6 protein-coding RGR , GPR88 , RRH , OPN4 , OPN5 , RHO , OPN1MW2 , OPN1MW3 , OPN1MW , OPN1SW , OPN1SW , OPN3 , GPR52 300822

Summary

This gene encodes for a light absorbing visual pigment of the opsin gene family. The encoded protein is called red cone photopigment or long-wavelength sensitive opsin. Opsins are G-protein coupled receptors with seven transmembrane domains, an N-terminal extracellular domain, and a C-terminal cytoplasmic domain. This gene and the medium-wavelength opsin gene are tandemly arrayed on the X chromosome and frequent unequal recombination and gene conversion may occur between these sequences. X chromosomes may have fusions of the medium- and long-wavelength opsin genes or may have more than one copy of these genes. Defects in this gene are the cause of partial, protanopic colorblindness. [provided by RefSeq, Jul 2008]

Gene Loss events - OPN1LW (17 results)

GL_ID Species Order Gene Loss Mechanism Loss Type Lineage Specific Citation
GL_8PNUP3 Mesoplodon carlhubbsi Artiodactyla LOF (frameshift, premature stop, ss) Full No 10.1093/molbev/msaa070
GL_AOMDAQ Balaenoptera physalus Artiodactyla LOF (frameshift, premature stop, ss) Full No 10.1371/journal.pgen.1003432
GL_F0ZQYF Eschrichtius robustus Artiodactyla LOF (frameshift, premature stop, ss) Full No 10.1371/journal.pgen.1003432
GL_F1QITL Eubalaena australis Artiodactyla LOF (frameshift, premature stop, ss) Full No 10.1371/journal.pgen.1003432
GL_GMNL89 Dasypus novemcinctus Cingulata Gene deletion Full No 10.1093/icb/icy004
GL_J3GK68 Balaenoptera musculus Artiodactyla LOF (frameshift, premature stop, ss) Full No 10.1371/journal.pgen.1003432
GL_JQT0YV Megaptera novaeangliae Artiodactyla LOF (frameshift, premature stop, ss) Full No 10.1371/journal.pgen.1003432
GL_MGLC9H Mesoplodon europaeus Artiodactyla LOF (frameshift, premature stop, ss) Full No 10.1093/molbev/msaa070
GL_NCDASW Balaenoptera acutorostrata Artiodactyla LOF (frameshift, premature stop, ss) Full No 10.1371/journal.pgen.1003432
GL_O7DRLD Kogia breviceps Artiodactyla LOF (frameshift, premature stop, ss) Full No 10.1371/journal.pgen.1003432