Ψ MMP20 - Balaena mysticetus

Reference Gene:
Job_ID:
Curator:
GlossID Species Gene Loss Mechanism Loss Type Lineage Specific Evidence Accession Nr.
GL_ENZCWX Balaena mysticetus Other Full Yes PCR & Sanger Sequencing Single

Statements

Type Excerpt DOI
Functional "MMP20 diverged from other matrix metalloproteinase loci prior to the common ancestry of tetrapods [24], and plays a key role in processing structural proteins (amelogenin, ameloblastin, enamelin) that are secreted into the extracellular matrix by ameloblasts during the secretory stage of enamel formation [23,25–28]." 10.1098/rspb.2010.1280
Mutation Description "Representative mysticete sequences from exons 3 and 4 of MMP20 lack frameshift mutations and stop codons, but we discovered a CHR-2 SINE insertion in exon 2 that is shared by eight mysticete species that are representative of all extant mysticete genera." 10.1098/rspb.2010.1280
Timing of Loss "The SINE insertion in exon 2 of MMP20 provides the first molecular evidence for pseudogenization of the genetic toolkit for enamel production in the common ancestor of extant mysticetes (figure 2)." 10.1098/rspb.2010.1280
Phenotypic "Given that MMP20 is required for proper processing of amelogenin, ameloblastin and enamelin, and may also be required for KLK4 activation; this insert provides compelling evidence that normal enamel formation was abrogated no later than the date of this SINE insertion." 10.1098/rspb.2010.1280

Curator Observations

Gene Loss - mechanism insertion of a CHR-2 SINE retroposon in exon 2 Lineage specific to mysticete species

Related Glosses

GL_ID Symbol Species Order Gene Loss Mechanism Loss Type Lineage Specific Citation
GL_OTZUKH MMP20 Balaena mysticetus Artiodactyla LOF (frameshift, premature stop, ss) Full No 10.1016/j.celrep.2014.12.008