Reference Gene
Gene name | Alias | Species | Exons | Type | Paralogs | EC number | OMIM |
---|---|---|---|---|---|---|---|
OPN1LW opsin 1, long wave sensitive | CBP , RCP , ROP , CBBM , COD5 | Homo sapiens | 6 | protein-coding | RGR , GPR88 , RRH , OPN4 , OPN5 , RHO , OPN1MW2 , OPN1MW3 , OPN1MW , OPN1SW , OPN1SW , OPN3 , GPR52 | 300822 |
Summary
This gene encodes for a light absorbing visual pigment of the opsin gene family. The encoded protein is called red cone photopigment or long-wavelength sensitive opsin. Opsins are G-protein coupled receptors with seven transmembrane domains, an N-terminal extracellular domain, and a C-terminal cytoplasmic domain. This gene and the medium-wavelength opsin gene are tandemly arrayed on the X chromosome and frequent unequal recombination and gene conversion may occur between these sequences. X chromosomes may have fusions of the medium- and long-wavelength opsin genes or may have more than one copy of these genes. Defects in this gene are the cause of partial, protanopic colorblindness. [provided by RefSeq, Jul 2008]
Gene Loss events - OPN1LW (17 results)
GL_ID | Species | Order | Gene Loss Mechanism | Loss Type | Lineage Specific | Citation |
---|---|---|---|---|---|---|
GL_8PNUP3 | Mesoplodon carlhubbsi | Artiodactyla | LOF (frameshift, premature stop, ss) | Full | No | 10.1093/molbev/msaa070 |
GL_AOMDAQ | Balaenoptera physalus | Artiodactyla | LOF (frameshift, premature stop, ss) | Full | No | 10.1371/journal.pgen.1003432 |
GL_F0ZQYF | Eschrichtius robustus | Artiodactyla | LOF (frameshift, premature stop, ss) | Full | No | 10.1371/journal.pgen.1003432 |
GL_F1QITL | Eubalaena australis | Artiodactyla | LOF (frameshift, premature stop, ss) | Full | No | 10.1371/journal.pgen.1003432 |
GL_GMNL89 | Dasypus novemcinctus | Cingulata | Gene deletion | Full | No | 10.1093/icb/icy004 |
GL_J3GK68 | Balaenoptera musculus | Artiodactyla | LOF (frameshift, premature stop, ss) | Full | No | 10.1371/journal.pgen.1003432 |
GL_JQT0YV | Megaptera novaeangliae | Artiodactyla | LOF (frameshift, premature stop, ss) | Full | No | 10.1371/journal.pgen.1003432 |
GL_MGLC9H | Mesoplodon europaeus | Artiodactyla | LOF (frameshift, premature stop, ss) | Full | No | 10.1093/molbev/msaa070 |
GL_NCDASW | Balaenoptera acutorostrata | Artiodactyla | LOF (frameshift, premature stop, ss) | Full | No | 10.1371/journal.pgen.1003432 |
GL_O7DRLD | Kogia breviceps | Artiodactyla | LOF (frameshift, premature stop, ss) | Full | No | 10.1371/journal.pgen.1003432 |