Ψ MMP20 - Eubalaena australis

Reference Gene:
Job_ID:
Curator:
GlossID Species Gene Loss Mechanism Loss Type Lineage Specific Evidence Accession Nr.
GL_WK9XUD Eubalaena australis LOF (frameshift, premature stop, ss) Full Yes Genomic

Statements

Type Excerpt DOI
Functional "Seven of these genes are enamel specific (ACP4, AMBN, AMELX, AMTN, ENAM, KLK4, MMP20) and two are related to dentin/tooth formation (...)." 10.1016/j.ympev.2022.107463
Mutation Description "Of the seven enamel genes, three (ACP4, KLK4, MMP20) were found to have inactivating mutations that are shared by all mysticetes. ACP4 has a 1-bp deletion in exon 4; KLK4 has a 1-bp deletion in exon 3; and MMP20 has a SINE insertion in exon 2." 10.1016/j.ympev.2022.107463
Timing of Loss "34,62 MYA" 10.1016/j.ympev.2022.107463
Other "Remnants of this insertion range from 302 to 324 bp in different mysticete species with assembled genomes, and all possible reading frames of this SINE insertion contain premature stop codons that would result in a severely truncated MMP20 protein (Meredith et al., 2011a)." 10.1016/j.ympev.2022.107463

Curator Observations

SINE insertion

Related Glosses

GL_ID Symbol Species Order Gene Loss Mechanism Loss Type Lineage Specific Citation
GL_3LMHQ7 MMP20 Eubalaena australis Artiodactyla Other Full 10.1098/rspb.2010.1280