Ψ NLRP10 - Orcinus orca

Reference Gene:
Job_ID:
Curator:
GlossID Species Gene Loss Mechanism Loss Type Lineage Specific Evidence Accession Nr.
GL_R4UFSF Orcinus orca Other Full No Genomic

Statements

Type Excerpt DOI
Functional "Comparative genomics showed that NLRP10, PYDC1, and CASP14, which are transcriptionally upregulated during human keratinocyte differentiation, lack functional orthologs in cetaceans (Fig. 3B; Suppl. Fig. S12)» (Lachner et al., 2017, p. 6)." 10.1038/s41598-017-17782-4
Methodology & Validation "The genome sequences (…) were investigated for the presence and sequence integrity of genes related to pyroptosis and IL-1 signaling." 10.1038/s41598-017-17782-4
Timing of Loss "Our comparative genomics data indicate that NLRP10 as well as NLRP1 have been lost in a common ancestor of cetaceans and cattle, indicating that its function was dispensable or even disadvantageous. As this ancestor had a terrestrial lifestyle, loss of NLRP10 was likely not associated with a change in the epidermal differentiation program but perhaps with the regulation of immune responses to pathogens." 10.1038/s41598-017-17782-4
Other "Screening gene expression levels in human tissues suggested that NLRP10, PYDC1, and CASP14 are predominantly expressed in epidermal keratinocytes (Suppl. Fig. S10)." 10.1038/s41598-017-17782-4

Curator Observations

Figure 3. Authors do not provide details regarding Gene loss mechanism.