Ψ UCP1 - Equus quagga

Reference Gene:
Job_ID:
Curator:
GlossID Species Gene Loss Mechanism Loss Type Lineage Specific Evidence Accession Nr.
GL_DY73NG Equus quagga LOF (frameshift, premature stop, ss) Full Yes PCR & Sanger Sequencing Single XM_046657152.1

Statements

Type Excerpt DOI
Functional "Adaptive nonshivering thermogenesis (NST) of placental mammals is predominantly mediated by uncoupling protein 1 (UCP1), which resides at high levels in the mitochondrial inner membrane of brown adipose tissue (BAT) (1)." 10.1126/sciadv.1602878
Methodology & Validation "We thus verified this deletion in both African and Asian elephant (Elephas maximus) DNA samples via PCR and Sanger sequencing techniques. PCR was also used to obtain ucp1 sequences from the three-toed brown-throated sloth (B. variegatus), silky anteater (Cyclopes didactylus), bowhead whale (Balaena mysticetus), Grant’s zebra (Equus quagga boehmi), black rhinoceros (Diceros bicornis), and Indian rhinoceros (Rhinoceros unicornis). Specimen information is provided in table S7 (64, 69–71)." 10.1126/sciadv.1602878
Timing of Loss "Potential thermogenic limitations arising from UCP1 loss [as suggested for suids (25)] were clearly not an impediment to the ability of equines to exploit cold environments given “that Alaskan horses prospered during the LGM [last glacial maximum; ~18,000 years ago], and appear to have been particularly well adapted to the more intense versions of the cold/arid Mammoth Steppe (44)." 10.1126/sciadv.1602878

Curator Observations

A conserved premature Stop codon in exon 2 was observed in all Equus species analyzed (see fig. 1).