Ψ UCP1 - Balaena mysticetus

Reference Gene:
Job_ID:
Curator:
GlossID Species Gene Loss Mechanism Loss Type Lineage Specific Evidence Accession Nr.
GL_9BQBEJ Balaena mysticetus LOF (frameshift, premature stop, ss) Full Yes PCR & Sanger Sequencing Single

Statements

Type Excerpt DOI
Functional "Adaptive nonshivering thermogenesis (NST) of placental mammals is predominantly mediated by uncoupling protein 1 (UCP1), which resides at high levels in the mitochondrial inner membrane of brown adipose tissue (BAT) (1)." 10.1126/sciadv.1602878
Methodology & Validation "We thus verified this deletion in both African and Asian elephant (Elephas maximus) DNA samples via PCR and Sanger sequencing techniques. PCR was also used to obtain ucp1 sequences from the three-toed brown-throated sloth (B. variegatus), silky anteater (Cyclopes didactylus), bowhead whale (Balaena mysticetus), Grant’s zebra (Equus quagga boehmi), black rhinoceros (Diceros bicornis), and Indian rhinoceros (Rhinoceros unicornis). Specimen information is provided in table S7 (64, 69–71)." 10.1126/sciadv.1602878
Timing of Loss "Notably, the non-delphinid cetacean UCP1 primary sequences presented in the latter study show premature stop codons stemming from both nonsense and frameshift mutations (as also seen in Fig. 1), whereas the presented killer whale and bottlenose dolphin “UCP1 sequences correspond to UCP2 and UCP3, respectively. Our results further indicate that the pseudogenization of ucp1 also immediately predates strong increases in body size during the early amphibious stages of archaeocete evolution [that is, from 15- to 30-kg Himalayacetus (52.5 Ma) to 590- to 720-kg Ambulocetus/Rodhocetus (48 Ma) (50, 51)]" 10.1126/sciadv.1602878

Curator Observations

A conserved loss of 4bp was found in all cetacean's sepcies that did not loss the exon

Related Glosses

GL_ID Symbol Species Order Gene Loss Mechanism Loss Type Lineage Specific Citation
GL_BJAESG UCP1 Balaena mysticetus Artiodactyla LOF (frameshift, premature stop, ss) Full No 10.1073/pnas.2106080118